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algorithms cell ranger single cell software suite 10x genomics version 6 1 2  (10X Genomics)

 
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    Structured Review

    10X Genomics algorithms cell ranger single cell software suite 10x genomics version 6 1 2
    Algorithms Cell Ranger Single Cell Software Suite 10x Genomics Version 6 1 2, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/algorithms+cell+ranger+single+cell+software+suite+10x+genomics+version+6+1+2/cellranger/pm39216475-235-196-203
    Average 86 stars, based on 1 article reviews
    algorithms cell ranger single cell software suite 10x genomics version 6 1 2 - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    Knock-Out:

    Article Title: ABCA7-dependent induction of neuropeptide Y is required for synaptic resilience in Alzheimer's disease through BDNF/NGFR signaling.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Abca7 knockout patient iPSC-derived neurons (MC0192) Kawatani et al.49 Experimental models: Organisms/strains abca7 knockout zebrafish This paper npy mutant zebrafish This paper Tg(NF-kB:GFP) reporter zebrafish Kanther et al.100 Oligonucleotides abca7_sgRNA56 F: 50-taatacgactcactataGGG CAAATCAAAAAGTCCATgttttagagctagaa -30 This paper abca7_sgRNA58 F: 50-taatacgactcactataGGA TCATGGGTCTGGGCTCAgttttagagctagaa -30 This paper Genotyping Rev, universal tail: 50- AAAAGCACCGACTCGGTGCCAC TTTTT CAAGTTGATAACGGACTA -30 This paper Screening for abca7 deletion Forward: 50- GAGGCCAAAACGGGAATATATGTG-3 This paper Screening for abca7 deletion Reverse: 50- GTGACCCACATTACCACTGTTTG-3 This paper Screening for npy deletion Forward: 50- GAAGATGTGGATGAGCTGGGCA -30 This paper Screening for npy deletion Reverse: 50- GCTCACCTCTGCCTTGTTATGAGG -30 This paper qRT-PCR for iPSCs: GAPDH: forward: 50- GTCTCCTCTGACTTCAACAGCG -30 This paper qRT-PCR for iPSCs: GAPDH reverse: 50- ACCACCCTGTTGCTGTAGCCAA -30 This paper qRT-PCR for iPSCs: ABCA7: forward: 50-CCTTGCACAGCTTGTTGGAG -30 This paper qRT-PCR for iPSCs: ABCA7 reverse: 50- CTGCTAGGTCCCCTGACACT -30 This paper qRT-PCR for iPSCs: NPY: forward: 50-CGCTGCGACACTACATCAAC -30 This paper qRT-PCR for iPSCs: NPY reverse: 50-CTCTGGGCTGGATCGTTTTCC -30 This paper qRT-PCR for iPSCs: SLC17A7: forward: 50-CTGGGGCTACATTGTCACTCA -30 This paper qRT-PCR for iPSCs: SLC17A7 reverse: 50-GCAAAGCCGAAAACTCTGTTG -30 This paper qRT-PCR for iPSCs: GAD1: forward: 50-GCGGACCCCAATACCACTAAC -30 This paper qRT-PCR for iPSCs: GAD1 reverse: 50-CACAAGGCGACTCTTCTCTTC -30 This paper Software and algorithms Cell Ranger Single Cell Software Suite 10X Genomics Version 6.1.2; RRID:SCR_017344 Seurat_4.1.3 Buther et al.101 Version 4.1.3; RRID:SCR_007322 R package v4.2.2.1 Version 4.2.2.1 GraphPad Prism Version 9.5.1; RRID:SCR_002798 Zen software (blue edition v3.2) for Zeiss LSM800 Carl Zeiss Version 3.2; RRID:SCR_013672 ROSMAP_snRNAseq_PFC code Mathys et al.68 https://github.com/mathyslab7/ ROSMAP_snRNAseq_PFC (Continued on next page) Cell Genomics 4, 100642, September 11, 2024 e2

    Mutagenesis:

    Article Title: ABCA7-dependent induction of neuropeptide Y is required for synaptic resilience in Alzheimer's disease through BDNF/NGFR signaling.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Abca7 knockout patient iPSC-derived neurons (MC0192) Kawatani et al.49 Experimental models: Organisms/strains abca7 knockout zebrafish This paper npy mutant zebrafish This paper Tg(NF-kB:GFP) reporter zebrafish Kanther et al.100 Oligonucleotides abca7_sgRNA56 F: 50-taatacgactcactataGGG CAAATCAAAAAGTCCATgttttagagctagaa -30 This paper abca7_sgRNA58 F: 50-taatacgactcactataGGA TCATGGGTCTGGGCTCAgttttagagctagaa -30 This paper Genotyping Rev, universal tail: 50- AAAAGCACCGACTCGGTGCCAC TTTTT CAAGTTGATAACGGACTA -30 This paper Screening for abca7 deletion Forward: 50- GAGGCCAAAACGGGAATATATGTG-3 This paper Screening for abca7 deletion Reverse: 50- GTGACCCACATTACCACTGTTTG-3 This paper Screening for npy deletion Forward: 50- GAAGATGTGGATGAGCTGGGCA -30 This paper Screening for npy deletion Reverse: 50- GCTCACCTCTGCCTTGTTATGAGG -30 This paper qRT-PCR for iPSCs: GAPDH: forward: 50- GTCTCCTCTGACTTCAACAGCG -30 This paper qRT-PCR for iPSCs: GAPDH reverse: 50- ACCACCCTGTTGCTGTAGCCAA -30 This paper qRT-PCR for iPSCs: ABCA7: forward: 50-CCTTGCACAGCTTGTTGGAG -30 This paper qRT-PCR for iPSCs: ABCA7 reverse: 50- CTGCTAGGTCCCCTGACACT -30 This paper qRT-PCR for iPSCs: NPY: forward: 50-CGCTGCGACACTACATCAAC -30 This paper qRT-PCR for iPSCs: NPY reverse: 50-CTCTGGGCTGGATCGTTTTCC -30 This paper qRT-PCR for iPSCs: SLC17A7: forward: 50-CTGGGGCTACATTGTCACTCA -30 This paper qRT-PCR for iPSCs: SLC17A7 reverse: 50-GCAAAGCCGAAAACTCTGTTG -30 This paper qRT-PCR for iPSCs: GAD1: forward: 50-GCGGACCCCAATACCACTAAC -30 This paper qRT-PCR for iPSCs: GAD1 reverse: 50-CACAAGGCGACTCTTCTCTTC -30 This paper Software and algorithms Cell Ranger Single Cell Software Suite 10X Genomics Version 6.1.2; RRID:SCR_017344 Seurat_4.1.3 Buther et al.101 Version 4.1.3; RRID:SCR_007322 R package v4.2.2.1 Version 4.2.2.1 GraphPad Prism Version 9.5.1; RRID:SCR_002798 Zen software (blue edition v3.2) for Zeiss LSM800 Carl Zeiss Version 3.2; RRID:SCR_013672 ROSMAP_snRNAseq_PFC code Mathys et al.68 https://github.com/mathyslab7/ ROSMAP_snRNAseq_PFC (Continued on next page) Cell Genomics 4, 100642, September 11, 2024 e2

    Quantitative RT-PCR:

    Article Title: ABCA7-dependent induction of neuropeptide Y is required for synaptic resilience in Alzheimer's disease through BDNF/NGFR signaling.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Abca7 knockout patient iPSC-derived neurons (MC0192) Kawatani et al.49 Experimental models: Organisms/strains abca7 knockout zebrafish This paper npy mutant zebrafish This paper Tg(NF-kB:GFP) reporter zebrafish Kanther et al.100 Oligonucleotides abca7_sgRNA56 F: 50-taatacgactcactataGGG CAAATCAAAAAGTCCATgttttagagctagaa -30 This paper abca7_sgRNA58 F: 50-taatacgactcactataGGA TCATGGGTCTGGGCTCAgttttagagctagaa -30 This paper Genotyping Rev, universal tail: 50- AAAAGCACCGACTCGGTGCCAC TTTTT CAAGTTGATAACGGACTA -30 This paper Screening for abca7 deletion Forward: 50- GAGGCCAAAACGGGAATATATGTG-3 This paper Screening for abca7 deletion Reverse: 50- GTGACCCACATTACCACTGTTTG-3 This paper Screening for npy deletion Forward: 50- GAAGATGTGGATGAGCTGGGCA -30 This paper Screening for npy deletion Reverse: 50- GCTCACCTCTGCCTTGTTATGAGG -30 This paper qRT-PCR for iPSCs: GAPDH: forward: 50- GTCTCCTCTGACTTCAACAGCG -30 This paper qRT-PCR for iPSCs: GAPDH reverse: 50- ACCACCCTGTTGCTGTAGCCAA -30 This paper qRT-PCR for iPSCs: ABCA7: forward: 50-CCTTGCACAGCTTGTTGGAG -30 This paper qRT-PCR for iPSCs: ABCA7 reverse: 50- CTGCTAGGTCCCCTGACACT -30 This paper qRT-PCR for iPSCs: NPY: forward: 50-CGCTGCGACACTACATCAAC -30 This paper qRT-PCR for iPSCs: NPY reverse: 50-CTCTGGGCTGGATCGTTTTCC -30 This paper qRT-PCR for iPSCs: SLC17A7: forward: 50-CTGGGGCTACATTGTCACTCA -30 This paper qRT-PCR for iPSCs: SLC17A7 reverse: 50-GCAAAGCCGAAAACTCTGTTG -30 This paper qRT-PCR for iPSCs: GAD1: forward: 50-GCGGACCCCAATACCACTAAC -30 This paper qRT-PCR for iPSCs: GAD1 reverse: 50-CACAAGGCGACTCTTCTCTTC -30 This paper Software and algorithms Cell Ranger Single Cell Software Suite 10X Genomics Version 6.1.2; RRID:SCR_017344 Seurat_4.1.3 Buther et al.101 Version 4.1.3; RRID:SCR_007322 R package v4.2.2.1 Version 4.2.2.1 GraphPad Prism Version 9.5.1; RRID:SCR_002798 Zen software (blue edition v3.2) for Zeiss LSM800 Carl Zeiss Version 3.2; RRID:SCR_013672 ROSMAP_snRNAseq_PFC code Mathys et al.68 https://github.com/mathyslab7/ ROSMAP_snRNAseq_PFC (Continued on next page) Cell Genomics 4, 100642, September 11, 2024 e2

    Software:

    Article Title: ABCA7-dependent induction of neuropeptide Y is required for synaptic resilience in Alzheimer's disease through BDNF/NGFR signaling.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Abca7 knockout patient iPSC-derived neurons (MC0192) Kawatani et al.49 Experimental models: Organisms/strains abca7 knockout zebrafish This paper npy mutant zebrafish This paper Tg(NF-kB:GFP) reporter zebrafish Kanther et al.100 Oligonucleotides abca7_sgRNA56 F: 50-taatacgactcactataGGG CAAATCAAAAAGTCCATgttttagagctagaa -30 This paper abca7_sgRNA58 F: 50-taatacgactcactataGGA TCATGGGTCTGGGCTCAgttttagagctagaa -30 This paper Genotyping Rev, universal tail: 50- AAAAGCACCGACTCGGTGCCAC TTTTT CAAGTTGATAACGGACTA -30 This paper Screening for abca7 deletion Forward: 50- GAGGCCAAAACGGGAATATATGTG-3 This paper Screening for abca7 deletion Reverse: 50- GTGACCCACATTACCACTGTTTG-3 This paper Screening for npy deletion Forward: 50- GAAGATGTGGATGAGCTGGGCA -30 This paper Screening for npy deletion Reverse: 50- GCTCACCTCTGCCTTGTTATGAGG -30 This paper qRT-PCR for iPSCs: GAPDH: forward: 50- GTCTCCTCTGACTTCAACAGCG -30 This paper qRT-PCR for iPSCs: GAPDH reverse: 50- ACCACCCTGTTGCTGTAGCCAA -30 This paper qRT-PCR for iPSCs: ABCA7: forward: 50-CCTTGCACAGCTTGTTGGAG -30 This paper qRT-PCR for iPSCs: ABCA7 reverse: 50- CTGCTAGGTCCCCTGACACT -30 This paper qRT-PCR for iPSCs: NPY: forward: 50-CGCTGCGACACTACATCAAC -30 This paper qRT-PCR for iPSCs: NPY reverse: 50-CTCTGGGCTGGATCGTTTTCC -30 This paper qRT-PCR for iPSCs: SLC17A7: forward: 50-CTGGGGCTACATTGTCACTCA -30 This paper qRT-PCR for iPSCs: SLC17A7 reverse: 50-GCAAAGCCGAAAACTCTGTTG -30 This paper qRT-PCR for iPSCs: GAD1: forward: 50-GCGGACCCCAATACCACTAAC -30 This paper qRT-PCR for iPSCs: GAD1 reverse: 50-CACAAGGCGACTCTTCTCTTC -30 This paper Software and algorithms Cell Ranger Single Cell Software Suite 10X Genomics Version 6.1.2; RRID:SCR_017344 Seurat_4.1.3 Buther et al.101 Version 4.1.3; RRID:SCR_007322 R package v4.2.2.1 Version 4.2.2.1 GraphPad Prism Version 9.5.1; RRID:SCR_002798 Zen software (blue edition v3.2) for Zeiss LSM800 Carl Zeiss Version 3.2; RRID:SCR_013672 ROSMAP_snRNAseq_PFC code Mathys et al.68 https://github.com/mathyslab7/ ROSMAP_snRNAseq_PFC (Continued on next page) Cell Genomics 4, 100642, September 11, 2024 e2



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    10X Genomics algorithms cell ranger single cell software suite 10x genomics version 6 1 2
    Algorithms Cell Ranger Single Cell Software Suite 10x Genomics Version 6 1 2, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/algorithms+cell+ranger+single+cell+software+suite+10x+genomics+version+6+1+2/cellranger/pm39216475-235-196-203
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